Links

 

Videos

Crystallography Videos

Naturally Obsessed: The Making of a Scientist

Seeing Things in a Different Light: How X-Ray Crystallography Revealed the Structure of Everything

 

3D & Crystallography & Structural tools

The Macromolecular Crystallography Research Center (MCRC)

CCP4

CCP4 Program Documentations

Crystallographic softwares

Diffraction Anisotropy Server- UCLA

Diffraction Anisotropy Server- STARANISO

The Dundee PRODRG2 Server

DynDom – Protein Domain Motion Analysis

ESRF Beamlines

ESRF Beamlines Manuals

General Instructions on crystalography from CPX

Generating ligand dictionary

Harry Plotter – PDB deposited plotted statistics

Hicup

HMM-based Protein Sequence Analysis

Ligand Expo

PipeAlign

Prediction of crystallization probability based on pI

Protein Data Bank

RockMaker Web application (Members Only!)

RockMaker Web application (outside BGU)

TargetDB – Structural Genomics Target Search

Uppsala Software Factory

Xtalpred Server

Auto-Rickshaw

Biacore

CastP pocket calculation

The Dundee PRODRG2

HelixDraw – helical wheel

HKL

Nucleic Acid Database (NDB)

PyMol

Raster3D

RNA secondary structure prediction

Science Direct publishing group

Structures of known Membrane Proteins

TLS Motion Determination

TMRPres2D

Verify3D Structure Evaluation Server

VM (Matthews Coefficient) Calculator

Commercial screen comparison

Crystallography 101 online course

Crystallography tutorials

Conserved Sequence Motif Search (CoSMoS)

Database of Interacting Proteins

Function annotation server

Heavy atom databank

Heavy Atom Database

Heavy Atom Reactivity Table

HotPatch Web Gateway

Metal Coordination Sites in Proteins

Motif Search (GeneDB)

MPG toolkit

Phenix refine command line tutorial

PHYRE Protein fold prediction

POSA (Partial Order Structure Alignment)

Protein CCD at the NKI

Screen optimisation tutorial

Simon’s Crystallography Toolbox

X-ray Anomalous Scattering

 

Academic Conferences

Elsevier Global Events

EMBO Events

Gordon Research Conferences

Nature Events

Zing Conferences

 

Crystallography tutorials

Crystallographic maps tutorial

Introduction to Macromolecular Refinement

 

Biochemistry & Molecular biology tools

The BioInfoBank Meta Server

Biological Buffers (AppliChem)

Biological buffers (Sigma)

Biowww forums

CCD construct planner

ChemDoodle

Current protocols

Description of Host strains

ESPript multiple alignment tool

ExPasy

Introduction to Protein Structures

Molecular Biology Gateway

Molecular Station

OligoAnalyzer – Dimer and hairpin formation prediction

Oligonucleotide Properties Calculator

Online Analysis of nucleotide and protein sequence data

Peptide solubility guidelines

The PSIPRED Protein Structure Prediction Server

Quickchange Primer design tool

Rare Codon Calculator

Reverse translation of amino acids

SAPS Statistical Analysis of Protein Sequences

SDS-PAGE Calculator

Serial Cloner v2.0

SER: Surface Entropy Reduction Prediction Server

Software for Mass Spec analysis

Tcoffee server – multiple sequence alignment of protein, RNA and DNA

Western Blotting optimization

A Colorimetric Method for Measuring Iron Content in Plants

Computational biology tools

FTMap – Computational solvent mapping

FindGEO

 

General scientific sites & Search engines

ChemBioFinder

Chemical Industry

ChemWeb

Community of Science

ISI web of knowledge

The Lab Rat

Online Bioinformatics course

Pubmed

Readability Score

Sci-Hub

SJR-Scientific Journal Ranking

 

General links

Erasmus+

iPEN

Cute PDF Editor – for PDF manipulation

Fresh patents

Unites States Patent Office

Bio Abroad

Lufthansa

Molecular Movies

Piled Higher and Deeper (PhD) comics

 

Ben-Gurion University Associated Centers

Ben-Gurion University of the Negev

The Macromolecular Crystallography Research Center (MCRC) in BGU

The National Institue for Biotechnology in the Negev

Ilse Katz Institute for Nanoscale Science and Technology

 

Research Labs

Jordan Chill Lab

Damien Faivre Lab

Komeili Lab

Jeff Miller Lab

Dirk Schuler Lab

Amir Sagi lab

 

Suppliers

Addgene

Mishoos – industrial design by Michael Shoosterman